Original Article

Takemori N, Takemori A, Tanaka Y, Endo Y, Hurst JL, Gómez-Baena G, Harman VM, Beynon RJ. MEERCAT: MULTIPLEXED EFFICIENT CELL FREE EXPRESSION OF RECOMBINANT QconCATS FOR LARGE SCALE ABSOLUTE PROTEOME QUANTIFICATION. Mol Cell Proteomics. 2017 Oct 20. pii: mcp.RA117.000284. doi: 10.1074/mcp.RA117.000284.

 

Ishizaki J, Takemori A, Suemori K, Matsumoto T, Akita Y, Sada KE, Yuzawa Y, Amano K, Takasaki Y, Harigai M, Arimura Y, Makino H, Yasukawa M, Takemori N, Hasegawa H; Research Committee of Intractable Vasculitis Syndrome and the Research Committee of Intractable Renal Disease of the Ministry of Health, Labour and Welfare of Japan. Targeted proteomics reveals promising biomarkers of disease activity and organ involvement in antineutrophil cytoplasmic antibody-associated vasculitis. Arthritis Res Ther. 19(1):218, 2017

 

Takemori N, Takemori A, Wongkongkathep P, Nshanian M, Loo RRO, Lermyte F, Loo JA. Top-down/Bottom-up Mass Spectrometry Workflow Using Dissolvable Polyacrylamide Gels. Anal Chem. 89:8244-8250, 2017

 

Kuwahara M, Ise W, Ochi M, Suzuki J, Kometani K, Maruyama S, Izumoto M, Matsumoto A, Takemori N, Takemori A, Shinoda K, Nakayama T, Ohara O, Yasukawa M, Sawasaki T, Kurosaki T, Yamashita M. Bach2-Batf interactions control Th2-type immune response by regulating the IL-4 amplification loop. Nat Commun. 7:12596, 2016

 

Takemori N, Takemori A, Tanaka Y, Ishizaki J, Hasegawa H, Shiraishi A, Ohashi Y. High-throughput production of a stable isotope-labeled peptide library for targeted proteomics using a wheat germ cell-free synthesis system. Mol Biosyst. 12:2389-2393, 2016

 

Takemori N, Takemori A, Matsuoka K, Morishita R, Matsushita N, Aoshima M, Takeda H, Sawasaki T, Endo Y, and Higashiyama S. High-throughput synthesis of stable isotope-labeled transmembrane proteins for targeted transmembrane proteomics using a wheat germ cell-free protein synthesis system. Mol Biosyst.11:361-365, 2015

 

Nemoto K, Takemori N, Seki M, Shinozaki K, Sawasaki T. Members of the Plant CRK-superfamily are Capable of trans-/auto-Phosphorylation of Tyrosine Residues. J Biol Chem. 2015 May 12. pii: jbc.M114.617274.  

 

Yokoi S, Okuyama T, Kamei Y, Naruse K, Taniguchi Y, Ansai S, Kinoshita M, Young LJ, Takemori N, Kubo T, and Takeuchi H. An essential role of the arginine vasotocin system in mate-guarding behaviors in triadic relationships of medaka fish (Oryzias latipes). PLoS Genet. 11(2):e1005009, 2015

 

Takemori N, Takemori A, Ishizaki J, and Hasegawa H.  Enzymatic protein digestion using a dissolvable polyacrylamide gel and its application to mass spectrometry-based proteomics. J Chromatogr B Analyt Technol Biomed Life Sci. 967:36-40, 2014

 

Shirato A, Kikugawa T, Miura N, Tanji N, Takemori N, Higashiyama S, and Yokoyama M.  Cisplatin resistance by induction of aldo-keto reductase family 1 member C2 in human bladder cancer cells. Oncology Letters. 7:674-678, 2014

 

Miwa D, Sakaue T, Inoue H, Takemori N, Kurokawa M, Fukuda S, Omi K, Goishi K, and Higashiyama S.  Protein kinase D2 and heat shock protein 90 beta are required for BCL6-associated zinc finger protein mRNA stabilization induced by vascular endothelial growth factor-A. Angiogenesis. 16:675-688 2013

 

Miura N, Takemori N, Kikugawa T, Tanji N, Higashiyama S, and Yokoyama M.  Adseverin: A novel cisplatin-resistant marker in the human bladder cancer cell line HT1376 identified by quantitative proteomic analysis. Molecular Oncology. 6:311-322, 2012

 

Ohnuki H, Inoue H, Takemori N, Nakayama H, Sakaue T, Fukuda S, Miwa D, Nishiwaki E, Hatano M, Tokuhisa T, Endo Y, Nose M, and Higashiyama S.  BAZF, a novel component of cullin3-based E3 ligase complex, mediates VEGFR and Notch cross-signaling in angiogenesis.  Blood. 119:2688-2698, 2012

 

Matsumoto H, Takemori N, and Komori N.  Methods in Molecular Biology, Protein identification on archived 2-D gels, 869:305-308, 2012

 

Mecklenburg KL, Takemori N, Komori N, Chu B, Hardie RC, Matsumoto H, and O'Tousa JE.  Retinophilin is a light-regulated phosphoprotein required to suppress photoreceptor dark noise in Drosophila. The Journal of Neuroscience. 30:1238-1249, 2010 

 

Takemori N and Yamamoto MT.  Proteome mapping of the Drosophila melanogaster male reproductive system. Proteomics. 9:2484-2493, 2009 (Selected for Faculty of 1000 Biology)

 

Shitama T, Hayashi H, Noge S, Uchio E, Oshima K, Haniu H, Takemori N, Komori N, and Matsumoto H. Proteome profiling of vitreoretinal diseases by cluster analysis. Proteomics Clinical Applications. 2:1265-1280, 2008 

 

Elliott MH, Nash ZA, Takemori N, Fliesler SJ, McClellan ME, and Naash MI.  Differential distribution of proteins and lipids in detergent-resistant and detergent-soluble domains in rod outer segment plasma membranes and disks. Journal of Neurochemistry. 104:336-352, 2008 

 

Tsuji T, Hirota T, Takemori N, Komori N, Yoshitane H, Fukuda M, Matsumoto H, and Fukada Y. Circadian proteomics of the mouse retina. Proteomics. 7:3500-3508, 2007

 

Takemori N, Komori N, Thompson JN Jr, Yamamoto MT, and Matsumoto H.  Novel eye-specific calmodulin methylation characterized by protein mapping in Drosophila melanogaster.  Proteomics. 7: 2651-2658, 2007 (Selected for Wiley PROTEOMICS cover illustration)

 

Komori N, Takemori N, Kim HK, Singh A, Hwang SH, Foreman RD, Chung K, Chung JM, and Matsumoto H.  Proteomics study of neuropathic and nonneuropathic dorsal root ganglia: altered protein regulation following segmental spinal nerve ligation injury.  Physiological Genomics. 29:215-230, 2007

 

Hurst RE, Kyker KD, Dozmorov MG, Takemori N, Singh A, Matsumoto H, Saban R, Betgovargez E, and Simonian MH.  Proteome-level display by 2-dimensional chromatography of extracellular matrix-dependent modulation of the phenotype of bladder cancer cells.  Proteome Science. 4:1-11, 2006

 

Haniu H, Komori N, Takemori N, Singh A, Ash JD, and Matsumoto H.  Proteomic trajectory mapping of biological transformation: application to developmental mouse retina. Proteomics. 6:3251-3261, 2006

 

Takemori N, Komori N, and Matsumoto H.  Highly sensitive multistage mass spectrometry enables small-scale analysis of protein glycosylation from two-dimensional polyacrylamide gels. Electrophoresis. 27:1394-1406, 2006 (Selected for Proteomics Key Papers of Wiley Electrophoresis 2006)

 

 

Review

Takemori N.

High-throughput quantitative analysis of transmembrane proteins using mass spectrometry. Biophysics, 2016, 56, 116 

 

Takemori N.

Targeted protein quantitation using selected reaction monitoring. Seikagaku. 2015 87:636-641. 

 

Yamamoto MT and Takemori N.  Proteome profiling reveals tissue-specific protein expression in the male reproductive system of Drosophila melanogaster.  Fly (Austin), 4:36-39, 2010 

  

Matsumoto H, Takemori N, Thompson JN Jr, Yamamoto MT, and Komori N.  Drosophila Proteome Atlas.  Drosophila Information Service, 90:162-164, 2007

 

武森信暁,小森直香,松本博行 2次元ゲル電気泳動と質量分析を用いた蛋白質のリン酸化および糖鎖修飾の微量解析. 蛋白質核酸酵素, 52:456-462, 2007

 

Book

武森信暁,山本雅敏  モデル動物利用マニュアル:生物機能モデルと新しいリソース・リサーチツール,第3節 哺乳類以外のモデル動物  第1項 ショウジョウバエ (5) 質量分析法によるショウジョウバエ組織の分子プロファイリング, 552-556, 株式会社エル・アイ・シー, 2011

 

Takemori N, Komori N, and Matsumoto H.  The Protein Protocols Handbook Third edition, Part V (150): Post-translational modifications. MS analysis of protein glycosylation, 1387-1394, Springer, 2009